This theoretical paper examines some of the potential impacts of different modes of university organization in Turkey (Faculty and Departmental) upon the scientific productivity of faculty members. A model of university organization is developed which distinguishes between the administrative and academic structures within the university. This model, derived largely from the literature on bureaucratic and professional organizations, provides the basis for a comparative analysis of the structural differences between the Faculty and Departmental mode of university organization in Turkey. Exploration of these structural differences leads to the hypothesis that the organizational structure of the Departmental university, in the Turkish setting, is more functional, on net balance, than the Faculty mode of university organization for the development of high levels of faculty productivity in the fields of science. Examination of some very limited data on the scientific activities of Turkish scientists in a sample of Turkish universities, though by no means conclusive, suggests that, within given social situations, this hypothesis may indeed be correct. Nevertheless, it is clear that there exists a need not only for more extensive research in this area, but also for more detailed information as to the social, political, and economic situations within which university organizations exist.